Problems and Technical Issues with Rosetta@home
Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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 David E KVolunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
We are still working on reducing a backlog of jobs so you should still be getting work. There are 270,000+ jobs and many many researchers waiting to submit more jobs when this backlog subsides which should be any day now. So there are plenty of jobs. Not sure what is going on with the mac clients though. My mac seems to be fine. When I get a chance, I'll look into this in more detail. I sent a note to the researcher with the large memory jobs (haven't heard back since he's on vacation in France I think). |
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Admpicard999 Send message Joined: 12 Oct 05 Posts: 1 Credit: 86,600 RAC: 0 |
Work unit generator for Android appears to be down despite it being up for other platforms. Any chance of a resolution soon? |
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David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
We don't have any android jobs lined up as of yet. I'll see if Vikram has some more peptide design jobs to run. We are limiting the android jobs to smaller proteins with low memory requirements. I'll let you know as soon as I do. thanks. |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 
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Again, another down of servers. Are these downs scheduled (as, for example, Seti) or are the usual problems?? |
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JonPer Send message Joined: 4 May 06 Posts: 14 Credit: 510,105 RAC: 0 |
My mac is running well. Are others having mac client issues? All of my other cross projects are working just fine, epecially Poem... But i just cant get Rosetta to let me download work packages to my MBP - to saad... 
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Killersocke@rosetta Send message Joined: 13 Nov 06 Posts: 29 Credit: 2,579,125 RAC: 0 |
Again killed Rosetta my PC :-( Task ID 878041758 Name SS_Mk1_0005_fold_SAVE_ALL_OUT_440853_1113_1 Received 28 Sep 2016 8:55:09 UTC ERROR: unrecognized residue HCY ERROR:: Exit from: ......srccoreiopose_from_sfrPoseFromSFRBuilder.cc line: 1030 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Task ID 878045826 Name rb_09_24_68009_112766__t000__2_C1_SAVE_ALL_OUT_IGNORE_THE_REST_440797_28_0 Received 28 Sep 2016 9:13:30 UTC ERROR: Unable to open atomset parameter file: minirosetta_databasechemical/atom_type_sets/fa_standard// </stderr_txt> Think i will stop and leave this Project now. |
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Sid Celery Send message Joined: 11 Feb 08 Posts: 2114 Credit: 41,100,175 RAC: 22,181
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Again killed Rosetta my PC :-( Because of 20 cumulative seconds on 2 out of 8 cores? Tough crowd...  
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Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Again killed Rosetta my PC :-( In the time I have been on Rosie I have seen server failures, bad work units. Files that are not formatted correctly and everything else under the moon. I don't quit. Rosie gets what she gives. If there is a lot of work, well a lot of work is returned. If not, oh well, other projects take up the slack until Rosie's handlers get the problems solved. 20 seconds is a microsecond of time compared to all the other stuff I have seen. If you quit you quit, but it is really a lame excuse that you lost a little bit of time due to some file compatibility problems. |
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David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
My mac is running well. Are others having mac client issues? I'm wondering if there's an issue with new OSX versions. Who else is having issues and can you provide as much info as possible to help us solve this? OSX version, any log info, etc.... |
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David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
Again killed Rosetta my PC :-( The first task we just recognized as a bad job (all will fail and we canceled it). Sorry about that. The researcher is looking into this. He though it was just a standard forward folding type job but obviously there's a special residue type that is not being recognized. They are supposed to test stuff locally and for the most part do, but this was thought of as a standard job mistakingly. The second task is a Robetta job which is definitely a standard job. This looks like there was an issue extracting the database or reading a standard database file. Can it have run out of disk space? Not sure what caused this error. If it continues, please let us know. |
Dr. Merkwürdigliebe Send message Joined: 5 Dec 10 Posts: 81 Credit: 2,657,273 RAC: 0 |
More validate errors from the rb_*_jobs https://boinc.bakerlab.org/rosetta/result.php?resultid=878146671 https://boinc.bakerlab.org/rosetta/result.php?resultid=878146673 https://boinc.bakerlab.org/rosetta/result.php?resultid=878146677 |
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Darrell Send message Joined: 28 Sep 06 Posts: 25 Credit: 51,934,631 RAC: 0 |
I am also seeing invalids on 5 of my computers: https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793157085 Octopus https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793156528 BigMax https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793109268 Cruncher https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793109067 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793109039 DDW3770k https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793108991 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793108774 WinPro7 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=793107947 plus 10 more all finished on October 1. I didn't look further back than this. |
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Dr. Merkwürdigliebe Send message Joined: 5 Dec 10 Posts: 81 Credit: 2,657,273 RAC: 0 |
Compute error on some rb_10_* job https://boinc.bakerlab.org/rosetta/result.php?resultid=878604899 |
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Extra Ball Send message Joined: 26 Sep 07 Posts: 1 Credit: 251,134 RAC: 0 |
Dunno if this can help with the rb_* problematic tasks but just got this message from the BoincManager : 02/10/2016 20:41:43 | rosetta@home | Task rb_10_01_69170_112916_ab_stage0_t000___robetta_IGNORE_THE_REST_05_10_441827_9_0 exited with zero status but no 'finished' file Note that this task didn't finish :) and is still in progress atm (26%) |
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4C4eiAAGZ8UPNoMz6DQdcxTWGQaa Send message Joined: 9 Sep 06 Posts: 2 Credit: 3,407,431 RAC: 1,268 |
Hi, had lot of validate errors from the rb_*_jobs https://boinc.bakerlab.org/rosetta/result.php?resultid=878191424 https://boinc.bakerlab.org/rosetta/result.php?resultid=878191312 https://boinc.bakerlab.org/rosetta/result.php?resultid=878173536 https://boinc.bakerlab.org/rosetta/result.php?resultid=878173302 https://boinc.bakerlab.org/rosetta/result.php?resultid=878171363 https://boinc.bakerlab.org/rosetta/result.php?resultid=878161616 https://boinc.bakerlab.org/rosetta/result.php?resultid=878158332 https://boinc.bakerlab.org/rosetta/result.php?resultid=878158417 https://boinc.bakerlab.org/rosetta/result.php?resultid=878157450 https://boinc.bakerlab.org/rosetta/result.php?resultid=878157270 https://boinc.bakerlab.org/rosetta/result.php?resultid=878157430 https://boinc.bakerlab.org/rosetta/result.php?resultid=878224361 https://boinc.bakerlab.org/rosetta/result.php?resultid=878224361 |
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Sid Celery Send message Joined: 11 Feb 08 Posts: 2114 Credit: 41,100,175 RAC: 22,181
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Hi, had lot of validate errors from the rb_*_jobs Same here. 14 of my last 110 completed tasks came up as a validate error. I know these get picked up and sorted out quickly enough, but it seems like a duplication of effort somewhere down the line
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David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
These errors are related to the issues we had with the database server a few weeks back. Things should stabilize as new jobs get pushed through and the old jobs get processed. If there are still more than normal validation issues after a week from now, please let me know. Thanks! |
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JonPer Send message Joined: 4 May 06 Posts: 14 Credit: 510,105 RAC: 0 |
Yet another week without being assigned work from server, last assignment from Rosetta back on the 15th of september. Seti@home, Lattice & Poem are workning around the clock - whats happening with Rosetta!?
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David E K Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 1 Jul 05 Posts: 1018 Credit: 4,334,829 RAC: 0 |
Yet another week without being assigned work from server, last assignment from Rosetta back on the 15th of september. Seti@home, Lattice & Poem are workning around the clock - whats happening with Rosetta!? Can you check if there's any useful log information from your BOINC client. I'm not sure why you are not getting work. There's plenty of work available. Anyone else on this forum have any suggestions to help find a solution? I wonder if it's an OSX version incompatibility with our current app version. |
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matteo Send message Joined: 20 Jul 16 Posts: 2 Credit: 283,350 RAC: 0 |
Hello, i had an error while subscribing with a new computer but I got these errors... 07/10/2016 08.20.08 | rosetta@home | Started download of minirosetta_database_d0bf94b.zip 07/10/2016 08.20.31 | rosetta@home | Temporarily failed download of minirosetta_database_d0bf94b.zip: connect() failed 07/10/2016 08.20.32 | rosetta@home | Started download of minirosetta_database_d0bf94b.zip 07/10/2016 08.20.35 | | Project communication failed: attempting access to reference site 07/10/2016 08.20.36 | | Internet access OK - project servers may be temporarily down. |
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Problems and Technical Issues with Rosetta@home
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