Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Meantime, the validator and the assimilator seem to be freezedDoes it matter? The tasks are coming through and we can return them. The little job of validating will take place very quickly once someone comes into the office on Monday and kicks the server. Are you that desperate for your credits? |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,524,889 RAC: 7,500 |
Are you that desperate for your credits? If you know me, the credits are the last of my thoughts. But if the validator has problems, the work could be lost: so no science and wasted work. |
Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0 |
Bad batch of RB tasks, perhaps? rb_10_07_420543_416291_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_03_06_2919833_26_0 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_10_07_420543_416291_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_10_07_420543_416291_ab_t000__robetta.zip -frag3 rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -fragA rb_10_07_420543_416291_ab_t000__robetta.200.6mers.index.gz -fragB rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2145106 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> rb_09_03_406077_401241__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_2917054_4409_1 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> (unknown error) - exit code 3221225477 (0xc0000005)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting @flags_rb_09_03_406077_401241__t000__0_C1_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip input_rb_09_03_406077_401241__t000__0_C1_robetta.zip -max_registry_shift 3 -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1826313 Using database: database_357d5d93529_n_methylminirosetta_database Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0000000000000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 7.9.0 Dump Timestamp : 10/08/22 10:00:20 Install Directory : C:Program FilesBOINC Data Directory : B:BOINC Project Symstore : https://boinc.bakerlab.org/rosetta/symstore LoadLibraryA( B:BOINCdbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( B:BOINCsymsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCsrcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: B:BOINCslots5;B:BOINCprojectsboinc.bakerlab.org_rosetta;srv*B:BOINCprojectsboinc.bakerlab.org_rosettasymbols*http://msdl.microsoft.com/download/symbols;srv*B:BOINCprojectsboinc.bakerlab.org_rosettasymbols*https://boinc.bakerlab.org/rosetta/symstore |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Look, it's just crashed, someone restarts the validator program on Monday and it goes through them in 20 minutes.Are you that desperate for your credits? |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,524,889 RAC: 7,500 |
Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Don't speak about R@H server. They are VERY old, not updated, etc |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
WTF? From their server status page, 72TB of SSD, show me another project with that, and I've never seen Rosetta slow or overloaded, unlike almost every other project out there that can't keep up:Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Web servers: Rack mounted 1U SuperMicro server Specs: Intel Xeon CPU E3-1270 v5 @ 3.60GHz, 32 GB RAM, X11SSH-TF, 10 GbE Storage: 256GB SSD for OS File system: ZFS on Linux v0.7 OS: Ubuntu Server 16.04 Primary file server: Rack mounted 4U SuperMicro server Specs: Dual Intel Xeon E5-2640 v4 @ 2.40GHz, 256 GB RAM, X10DRD-IT, 2 x 10 GbE Storage: 72 x 1TB SSD via LSI SAS 9207-8i File system: ZFS on Linux v0.7 (raidz2, 9 vdevs with 8 disks) served via NFSv4 OS: Ubuntu Server 16.04 Backup file server: Rack mounted 4U SuperMicro server Specs: Intel Xeon E5-1650 v4 @ 3.60GHz, 128 GB RAM, X10SRM-TF, 2 x 10 GbE Storage: 24 x 10TB HGST drives via LSI SAS 9300-8i File system: ZFS on Linux v0.7 (raidz2, 2 vdevs with 12 disks) OS: Ubuntu Server 16.04 Database servers: Rack mounted 1U SuperMicro server Specs: Intel Xeon CPU E3-1270 v6 @ 3.80GHz, 64 GB RAM, X11SSH-TF, 10 GbE Storage: 2 x 1TB SSD File system: ZFS on Linux v0.7 (mirror) OS: Ubuntu Server 16.04 |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
Ubuntu 16.04 will recieve Extended Security Maintenance up to 2026 https://ubuntu.com/about/release-cycle |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,524,889 RAC: 7,500 |
Ubuntu 16.04 will recieve Extended Security Maintenance up to 2026 For a fee. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,524,889 RAC: 7,500 |
WTF? From their server status page, 72TB of SSD, show me another project with that, and I've never seen Rosetta slow or overloaded, unlike almost every other project out there that can't keep up: All this HW and SW are, almost, 10 year old. Ehy, It's not a problem, i have customers with over 12 years old server. But you can't say it's all up to date. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
For me 10 year old is from 2010. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
I thought the point of Linux was it was free? Otherwise everyone would be on Windows.Ubuntu 16.04 will recieve Extended Security Maintenance up to 2026 |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
For me 10 year old is from 2010.You are speaking to us from the past? Cool. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
I doubt the 72TB of SSD is 10 years old. My equipment is made of old and new stuff, you upgrade the bits that are the bottleneck.WTF? From their server status page, 72TB of SSD, show me another project with that, and I've never seen Rosetta slow or overloaded, unlike almost every other project out there that can't keep up: |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
Look at RHEL. You pay for using packages built on their hardware and professional techsupport. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Look at RHEL. You pay for using packages built on their hardware and professional techsupport.Ouch. I've never paid for Linux. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
There are rebuilds from the source code. For example Rocky linux. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
There are rebuilds from the source code. For example Rocky linux.If you have to pay for it you might aswell get Windows. Assuming you don't use Piratebay ROFL! Hands up who thinks I paid MS for 8 Windows 11 licenses. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
Kms? |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Kms?Correct, tick, one mark. I know someone who would have paid the full $200 each, that would be $1600 for some Boinc machines. I don't think so. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Dropped WCG. Seems the GPU server can't do it's job handing out tasks properly. I don't get their rah rah text all over the place but yet they can't send any work? Maybe CPU fairs better, but GPU is nuts. |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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