rosetta python projects (vbox64)

Message boards : Number crunching : rosetta python projects (vbox64)

To post messages, you must log in.

Previous · 1 · 2 · 3 · 4 · 5 · 6 · Next

AuthorMessage
Profile dcdc

Send message
Joined: 3 Nov 05
Posts: 1831
Credit: 119,473,844
RAC: 11,503
Message 102800 - Posted: 22 Sep 2021, 6:45:10 UTC - in response to Message 102797.  
Last modified: 22 Sep 2021, 6:45:24 UTC

I'd run a RAM test if you haven't already - you can run memtest86+ from the windows start menu these days.

And the PSU is always high on my suspicion list for instability. I don't bother with anything other than Seasonic PSUs these days, although there are other good brands and models out there.
ID: 102800 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102804 - Posted: 22 Sep 2021, 12:28:33 UTC

Looks like we chewed up the "large" amount of python tasks.
Plenty of classic stuff though.
ID: 102804 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1991
Credit: 9,520,400
RAC: 12,860
Message 102805 - Posted: 22 Sep 2021, 12:47:56 UTC - in response to Message 102804.  

Looks like we chewed up the "large" amount of python tasks.
Plenty of classic stuff though.


I think that the "large" amount was caused by the "download error" that continued to re-send wus.
Now that wus are chunched correctly, the batch finished
ID: 102805 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 881
Credit: 52,257,545
RAC: 0
Message 102807 - Posted: 22 Sep 2021, 15:20:45 UTC - in response to Message 102805.  

After they were bitten by that last error, they are probably waiting to analyze the results before issuing more.
I hope there are a lot of them.
ID: 102807 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102808 - Posted: 22 Sep 2021, 16:21:17 UTC - in response to Message 102754.  

Today, still download error[/quote]

No such task: 1427511076

And your completed task does not exist...that's interesting.
ID: 102808 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 881
Credit: 52,257,545
RAC: 0
Message 102810 - Posted: 22 Sep 2021, 16:36:31 UTC - in response to Message 102808.  

ID: 102810 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102814 - Posted: 22 Sep 2021, 18:23:44 UTC - in response to Message 102810.  

Maybe that is an old one? The last two worked for me.
https://boinc.bakerlab.org/rosetta/results.php?hostid=5954010&offset=0&show_names=0&state=4&appid=9


That "old" one should still be in the database.
Though I lost a ton as well.

Something is screwy with these tasks.
ID: 102814 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 881
Credit: 52,257,545
RAC: 0
Message 102820 - Posted: 22 Sep 2021, 22:50:15 UTC - in response to Message 102814.  

I just completed three more without a problem.
https://boinc.bakerlab.org/rosetta/results.php?hostid=5954010&offset=0&show_names=0&state=4&appid=9

But sometimes VirtualBox on Windows does not behave the same way as on Linux.
It would help if other Windows users would chime in with their successes or failures.
ID: 102820 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102821 - Posted: 23 Sep 2021, 7:53:49 UTC - in response to Message 102820.  

I just completed three more without a problem.
https://boinc.bakerlab.org/rosetta/results.php?hostid=5954010&offset=0&show_names=0&state=4&appid=9

But sometimes VirtualBox on Windows does not behave the same way as on Linux.
It would help if other Windows users would chime in with their successes or failures.



I got some early python tasks, so while you guys were having checksum errors, I was running just fine.
They move along just fine, they are big, but LHC ATLAS comes just as close in memory use.
I have 4 cores set for RAH and I was running 2 Python and 2 4.2 plus ATLAS and all the rest on my 16 core 2 GPU system with no problems.

But then with the massive download bug something went screwy and I lost 11 python tasks to deadline.
Since there is only a handful of Python work left all I get now is 4.20.
ID: 102821 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tomcat雄猫

Send message
Joined: 20 Dec 14
Posts: 180
Credit: 5,386,173
RAC: 0
Message 102835 - Posted: 24 Sep 2021, 11:42:01 UTC - in response to Message 102821.  

Just got two Python tasks than seemingly ran without issues. These run fast.

aaaf-ACBC_pp-SAR_pp-NMABU_pp-NMBEN3_1_1739390_5_1
<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2021-09-24 02:59:40 (40500): Detected: vboxwrapper 26202
2021-09-24 02:59:40 (40500): Detected: BOINC client v7.16.11
2021-09-24 02:59:41 (40500): Detected: VirtualBox VboxManage Interface (Version: 6.1.26)
2021-09-24 02:59:42 (40500): Feature: Checkpoint interval offset (22 seconds)
2021-09-24 02:59:42 (40500): Detected: Minimum checkpoint interval (600.000000 seconds)
2021-09-24 02:59:43 (40500): Create VM. (boinc_5003e81816a4be82, slot#4)
2021-09-24 02:59:44 (40500): Setting Memory Size for VM. (6144MB)
2021-09-24 02:59:45 (40500): Setting CPU Count for VM. (1)
2021-09-24 02:59:45 (40500): Setting Chipset Options for VM.
2021-09-24 02:59:46 (40500): Setting Boot Options for VM.
2021-09-24 02:59:46 (40500): Setting Network Configuration for NAT.
2021-09-24 02:59:48 (40500): Disabling VM Network Access.
2021-09-24 02:59:48 (40500): Disabling USB Support for VM.
2021-09-24 02:59:49 (40500): Disabling COM Port Support for VM.
2021-09-24 02:59:49 (40500): Disabling LPT Port Support for VM.
2021-09-24 02:59:50 (40500): Disabling Audio Support for VM.
2021-09-24 02:59:51 (40500): Disabling Clipboard Support for VM.
2021-09-24 02:59:53 (40500): Disabling Drag and Drop Support for VM.
2021-09-24 02:59:53 (40500): Adding storage controller(s) to VM.
2021-09-24 02:59:55 (40500): Adding virtual disk drive to VM. (vm_image.vdi)
2021-09-24 02:59:56 (40500): Adding VirtualBox Guest Additions to VM.
2021-09-24 02:59:57 (40500): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2021-09-24 02:59:57 (40500): Enabling shared directory for VM.
2021-09-24 02:59:58 (40500): Starting VM using VBoxManage interface. (boinc_5003e81816a4be82, slot#4)
2021-09-24 03:00:04 (40500): Successfully started VM. (PID = '6528')
2021-09-24 03:00:05 (40500): Reporting VM Process ID to BOINC.
2021-09-24 03:00:05 (40500): Guest Log: BIOS: VirtualBox 6.1.26
2021-09-24 03:00:05 (40500): Guest Log: CPUID EDX: 0x178bfbff
2021-09-24 03:00:05 (40500): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2021-09-24 03:00:05 (40500): VM state change detected. (old = 'poweredoff', new = 'running')
2021-09-24 03:00:05 (40500): Preference change detected
2021-09-24 03:00:05 (40500): Setting CPU throttle for VM. (100%)
2021-09-24 03:00:05 (40500): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2021-09-24 03:00:06 (40500): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2021-09-24 03:00:06 (40500): Guest Log: BIOS: Booting from Hard Disk...
2021-09-24 03:00:20 (40500): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2021-09-24 03:00:20 (40500): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2021-09-24 03:00:59 (40500): Guest Log: VBoxService 5.2.42 r137960 (verbosity: 0) linux.amd64 (May 13 2020 21:45:13) release log
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000092 main     Log opened 2021-09-24T03:00:57.224879000Z
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000272 main     OS Product: Linux
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000298 main     OS Release: 4.19.0-14-amd64
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000314 main     OS Version: #1 SMP Debian 4.19.171-2 (2021-01-30)
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000329 main     Executable: /opt/VBoxGuestAdditions-5.2.42/sbin/VBoxService
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000330 main     Process ID: 547
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.000330 main     Package type: LINUX_64BITS_GENERIC
2021-09-24 03:00:59 (40500): Guest Log: 00:00:00.001302 main     5.2.42 r137960 started. Verbose level = 0
2021-09-24 03:01:09 (40500): Guest Log: 00:00:10.013682 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 775 167 000ns (GuestNow=1 632 466 869 012 293 000 ns GuestLast=1 632 452 457 237 126 000 ns fSetTimeLastLoop=true )
2021-09-24 03:10:28 (40500): Creating new snapshot for VM.
2021-09-24 03:10:46 (40500): Checkpoint completed.
2021-09-24 03:20:30 (40500): Creating new snapshot for VM.
2021-09-24 03:20:42 (40500): Deleting stale snapshot.
2021-09-24 03:20:47 (40500): Checkpoint completed.
2021-09-24 03:30:31 (40500): Creating new snapshot for VM.
2021-09-24 03:30:40 (40500): Deleting stale snapshot.
2021-09-24 03:30:43 (40500): Checkpoint completed.
2021-09-24 03:40:32 (40500): Creating new snapshot for VM.
2021-09-24 03:40:41 (40500): Deleting stale snapshot.
2021-09-24 03:40:44 (40500): Checkpoint completed.
2021-09-24 03:50:36 (40500): Creating new snapshot for VM.
2021-09-24 03:50:53 (40500): Deleting stale snapshot.
2021-09-24 03:50:55 (40500): Checkpoint completed.
2021-09-24 04:00:37 (40500): Creating new snapshot for VM.
2021-09-24 04:00:45 (40500): Deleting stale snapshot.
2021-09-24 04:00:49 (40500): Checkpoint completed.
2021-09-24 04:10:37 (40500): Creating new snapshot for VM.
2021-09-24 04:10:46 (40500): Deleting stale snapshot.
2021-09-24 04:10:49 (40500): Checkpoint completed.
2021-09-24 04:20:40 (40500): Creating new snapshot for VM.
2021-09-24 04:20:50 (40500): Deleting stale snapshot.
2021-09-24 04:20:54 (40500): Checkpoint completed.
2021-09-24 04:30:40 (40500): Creating new snapshot for VM.
2021-09-24 04:30:56 (40500): Deleting stale snapshot.
2021-09-24 04:30:59 (40500): Checkpoint completed.
2021-09-24 04:40:14 (40500): Status Report: Elapsed Time: '6000.198092'
2021-09-24 04:40:14 (40500): Status Report: CPU Time: '5782.453125'
2021-09-24 04:40:41 (40500): Creating new snapshot for VM.
2021-09-24 04:40:52 (40500): Deleting stale snapshot.
2021-09-24 04:40:55 (40500): Checkpoint completed.
2021-09-24 04:50:41 (40500): Creating new snapshot for VM.
2021-09-24 04:50:52 (40500): Deleting stale snapshot.
2021-09-24 04:50:55 (40500): Checkpoint completed.
2021-09-24 05:00:42 (40500): Creating new snapshot for VM.
2021-09-24 05:00:53 (40500): Deleting stale snapshot.
2021-09-24 05:00:57 (40500): Checkpoint completed.
2021-09-24 05:10:42 (40500): Creating new snapshot for VM.
2021-09-24 05:10:51 (40500): Deleting stale snapshot.
2021-09-24 05:10:54 (40500): Checkpoint completed.
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.256241 control  Guest control service stopped
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.256318 control  Guest control worker returned with rc=VINF_SUCCESS
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.256481 main     Session 0 is about to close ...
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.256510 main     Stopping all guest processes ...
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.256530 main     Closing all guest files ...
2021-09-24 05:11:14 (40500): Guest Log: 02:07:56.292250 main     Ended.
2021-09-24 05:11:17 (40500): VM is no longer is a running state. It is in 'poweredoff'.
2021-09-24 05:11:17 (40500): VM state change detected. (old = 'running', new = 'poweredoff')
2021-09-24 05:11:17 (40500): Powering off VM.
2021-09-24 05:11:17 (40500): Deregistering VM. (boinc_5003e81816a4be82, slot#4)
2021-09-24 05:11:17 (40500): Deleting stale snapshot.
2021-09-24 05:11:18 (40500): Removing network bandwidth throttle group from VM.
2021-09-24 05:11:18 (40500): Removing VM from VirtualBox.
2021-09-24 05:11:24 (40500): Virtual machine exited.
05:11:29 (40500): called boinc_finish(0)

</stderr_txt>


aaaf-ACBC_pp-SAR_pp-mPIP_pp-NMBEN3_0_1739394_8_1
<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2021-09-24 05:20:06 (29324): Detected: vboxwrapper 26202
2021-09-24 05:20:06 (29324): Detected: BOINC client v7.16.11
2021-09-24 05:20:07 (29324): Detected: VirtualBox VboxManage Interface (Version: 6.1.26)
2021-09-24 05:20:07 (29324): Feature: Checkpoint interval offset (554 seconds)
2021-09-24 05:20:07 (29324): Detected: Minimum checkpoint interval (600.000000 seconds)
2021-09-24 05:20:08 (29324): Create VM. (boinc_d4fe8acb7880f1d4, slot#8)
2021-09-24 05:20:08 (29324): Setting Memory Size for VM. (6144MB)
2021-09-24 05:20:09 (29324): Setting CPU Count for VM. (1)
2021-09-24 05:20:09 (29324): Setting Chipset Options for VM.
2021-09-24 05:20:09 (29324): Setting Boot Options for VM.
2021-09-24 05:20:09 (29324): Setting Network Configuration for NAT.
2021-09-24 05:20:10 (29324): Disabling VM Network Access.
2021-09-24 05:20:10 (29324): Disabling USB Support for VM.
2021-09-24 05:20:11 (29324): Disabling COM Port Support for VM.
2021-09-24 05:20:11 (29324): Disabling LPT Port Support for VM.
2021-09-24 05:20:11 (29324): Disabling Audio Support for VM.
2021-09-24 05:20:11 (29324): Disabling Clipboard Support for VM.
2021-09-24 05:20:12 (29324): Disabling Drag and Drop Support for VM.
2021-09-24 05:20:12 (29324): Adding storage controller(s) to VM.
2021-09-24 05:20:12 (29324): Adding virtual disk drive to VM. (vm_image.vdi)
2021-09-24 05:20:12 (29324): Adding VirtualBox Guest Additions to VM.
2021-09-24 05:20:13 (29324): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2021-09-24 05:20:13 (29324): Enabling shared directory for VM.
2021-09-24 05:20:13 (29324): Starting VM using VBoxManage interface. (boinc_d4fe8acb7880f1d4, slot#8)
2021-09-24 05:20:18 (29324): Successfully started VM. (PID = '31832')
2021-09-24 05:20:18 (29324): Reporting VM Process ID to BOINC.
2021-09-24 05:20:18 (29324): Guest Log: BIOS: VirtualBox 6.1.26
2021-09-24 05:20:18 (29324): Guest Log: CPUID EDX: 0x178bfbff
2021-09-24 05:20:18 (29324): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2021-09-24 05:20:18 (29324): VM state change detected. (old = 'poweredoff', new = 'running')
2021-09-24 05:20:18 (29324): Preference change detected
2021-09-24 05:20:18 (29324): Setting CPU throttle for VM. (100%)
2021-09-24 05:20:19 (29324): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2021-09-24 05:20:20 (29324): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2021-09-24 05:20:20 (29324): Guest Log: BIOS: Booting from Hard Disk...
2021-09-24 05:20:32 (29324): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2021-09-24 05:20:32 (29324): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2021-09-24 05:21:14 (29324): Guest Log: VBoxService 5.2.42 r137960 (verbosity: 0) linux.amd64 (May 13 2020 21:45:13) release log
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000087 main     Log opened 2021-09-24T05:21:12.207677000Z
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000157 main     OS Product: Linux
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000178 main     OS Release: 4.19.0-14-amd64
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000196 main     OS Version: #1 SMP Debian 4.19.171-2 (2021-01-30)
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000215 main     Executable: /opt/VBoxGuestAdditions-5.2.42/sbin/VBoxService
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000215 main     Process ID: 547
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000216 main     Package type: LINUX_64BITS_GENERIC
2021-09-24 05:21:14 (29324): Guest Log: 00:00:00.000675 main     5.2.42 r137960 started. Verbose level = 0
2021-09-24 05:21:24 (29324): Guest Log: 00:00:10.018443 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 678 642 000ns (GuestNow=1 632 475 283 902 814 000 ns GuestLast=1 632 460 872 224 172 000 ns fSetTimeLastLoop=true )
2021-09-24 05:39:34 (29324): Creating new snapshot for VM.
2021-09-24 05:39:43 (29324): Checkpoint completed.
2021-09-24 05:49:35 (29324): Creating new snapshot for VM.
2021-09-24 05:49:42 (29324): Deleting stale snapshot.
2021-09-24 05:49:44 (29324): Checkpoint completed.
2021-09-24 05:59:36 (29324): Creating new snapshot for VM.
2021-09-24 05:59:44 (29324): Deleting stale snapshot.
2021-09-24 05:59:47 (29324): Checkpoint completed.
2021-09-24 06:09:37 (29324): Creating new snapshot for VM.
2021-09-24 06:09:47 (29324): Deleting stale snapshot.
2021-09-24 06:09:51 (29324): Checkpoint completed.
2021-09-24 06:19:38 (29324): Creating new snapshot for VM.
2021-09-24 06:19:56 (29324): Deleting stale snapshot.
2021-09-24 06:20:01 (29324): Checkpoint completed.
2021-09-24 06:29:07 (29324): VM state change detected. (old = 'running', new = 'paused')
2021-09-24 06:29:27 (29324): VM state change detected. (old = 'paused', new = 'running')
2021-09-24 06:30:00 (29324): Creating new snapshot for VM.
2021-09-24 06:30:11 (29324): Deleting stale snapshot.
2021-09-24 06:30:14 (29324): Checkpoint completed.
2021-09-24 06:40:02 (29324): Creating new snapshot for VM.
2021-09-24 06:40:11 (29324): Deleting stale snapshot.
2021-09-24 06:40:14 (29324): Checkpoint completed.
2021-09-24 06:50:02 (29324): Creating new snapshot for VM.
2021-09-24 06:50:10 (29324): Deleting stale snapshot.
2021-09-24 06:50:13 (29324): Checkpoint completed.
2021-09-24 07:00:03 (29324): Creating new snapshot for VM.
2021-09-24 07:00:11 (29324): Deleting stale snapshot.
2021-09-24 07:00:14 (29324): Checkpoint completed.
2021-09-24 07:00:44 (29324): Status Report: Elapsed Time: '6000.839872'
2021-09-24 07:00:44 (29324): Status Report: CPU Time: '5819.218750'
2021-09-24 07:10:04 (29324): Creating new snapshot for VM.
2021-09-24 07:10:11 (29324): Deleting stale snapshot.
2021-09-24 07:10:14 (29324): Checkpoint completed.
2021-09-24 07:17:24 (29324): VM state change detected. (old = 'running', new = 'paused')
2021-09-24 07:17:34 (29324): VM state change detected. (old = 'paused', new = 'running')
2021-09-24 07:18:25 (29324): VM state change detected. (old = 'running', new = 'paused')
2021-09-24 07:18:45 (29324): VM state change detected. (old = 'paused', new = 'running')
2021-09-24 07:19:05 (29324): VM state change detected. (old = 'running', new = 'paused')
2021-09-24 07:19:15 (29324): VM state change detected. (old = 'paused', new = 'running')
2021-09-24 07:20:48 (29324): Creating new snapshot for VM.
2021-09-24 07:20:56 (29324): Deleting stale snapshot.
2021-09-24 07:21:00 (29324): Checkpoint completed.
2021-09-24 07:21:01 (29324): VM state change detected. (old = 'running', new = 'paused')
2021-09-24 07:21:05 (29324): VM state change detected. (old = 'paused', new = 'running')
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.360141 control  Guest control service stopped
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.360639 control  Guest control worker returned with rc=VINF_SUCCESS
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.361428 main     Session 0 is about to close ...
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.361486 main     Stopping all guest processes ...
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.361508 main     Closing all guest files ...
2021-09-24 07:21:07 (29324): Guest Log: 01:57:18.827722 main     Ended.
2021-09-24 07:21:10 (29324): VM is no longer is a running state. It is in 'poweredoff'.
2021-09-24 07:21:10 (29324): VM state change detected. (old = 'running', new = 'poweredoff')
2021-09-24 07:21:10 (29324): Powering off VM.
2021-09-24 07:21:10 (29324): Deregistering VM. (boinc_d4fe8acb7880f1d4, slot#8)
2021-09-24 07:21:10 (29324): Deleting stale snapshot.
2021-09-24 07:21:10 (29324): Removing network bandwidth throttle group from VM.
2021-09-24 07:21:11 (29324): Removing VM from VirtualBox.
2021-09-24 07:21:16 (29324): Virtual machine exited.
07:21:16 (29324): called boinc_finish(0)

</stderr_txt>
]]>


What does
Radical guest time change: 14 411 678 642 000ns (GuestNow=1 632 475 283 902 814 000 ns GuestLast=1 632 460 872 224 172 000 ns fSetTimeLastLoop=true )
mean, btw?
ID: 102835 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sid Celery

Send message
Joined: 11 Feb 08
Posts: 2114
Credit: 41,101,402
RAC: 21,872
Message 102842 - Posted: 25 Sep 2021, 3:53:27 UTC - in response to Message 102800.  

I'd run a RAM test if you haven't already - you can run memtest86+ from the windows start menu these days.

And the PSU is always high on my suspicion list for instability. I don't bother with anything other than Seasonic PSUs these days, although there are other good brands and models out there.

I've run CHKDSK because of the crashes. No probs. I haven't run Memtest86 as I'm not oc'ing RAM at all and I'm pretty confident with it.
A power-supply issue several years ago led me to over-speccing that component, so I have an EVGA 750 Gold, which I think may be a re-badged Seasonic iirc.
I'm pretty sure it's down to the BIOS and the particularly ugly things I ask it to do.

The 5800X has always run pretty hot from launch and BIOS updates have improved this with each version - the one I just updated to has made a significant difference and even though I'm not home I can see that PC is running tasks to completion rather than crashing almost all of them, so I think I'm on the right lines now, which is lucky as I'm going to be away from home for 8 days out of 10, with a few of them out of the country, so it'll be a while before I do anything with it for the remainder of the month.
Thanks for offering the tips
ID: 102842 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102845 - Posted: 26 Sep 2021, 23:36:39 UTC - in response to Message 102842.  

I'd run a RAM test if you haven't already - you can run memtest86+ from the windows start menu these days.

And the PSU is always high on my suspicion list for instability. I don't bother with anything other than Seasonic PSUs these days, although there are other good brands and models out there.

I've run CHKDSK because of the crashes. No probs. I haven't run Memtest86 as I'm not oc'ing RAM at all and I'm pretty confident with it.
A power-supply issue several years ago led me to over-speccing that component, so I have an EVGA 750 Gold, which I think may be a re-badged Seasonic iirc.
I'm pretty sure it's down to the BIOS and the particularly ugly things I ask it to do.

The 5800X has always run pretty hot from launch and BIOS updates have improved this with each version - the one I just updated to has made a significant difference and even though I'm not home I can see that PC is running tasks to completion rather than crashing almost all of them, so I think I'm on the right lines now, which is lucky as I'm going to be away from home for 8 days out of 10, with a few of them out of the country, so it'll be a while before I do anything with it for the remainder of the month.
Thanks for offering the tips



Check your CPU core temps as well. Also don't OC your system to much. RAH is sensitive to how fast your cram data. Python, not sure, but 4.2 yeah, touchy.
ID: 102845 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tomcat雄猫

Send message
Joined: 20 Dec 14
Posts: 180
Credit: 5,386,173
RAC: 0
Message 102846 - Posted: 27 Sep 2021, 8:20:30 UTC - in response to Message 102845.  
Last modified: 27 Sep 2021, 8:20:58 UTC

RAH is sensitive to how fast your cram data. Python, not sure, but 4.2 yeah, touchy.


IIRC, AMD's zen architecture is also sensitive to how fast you can cram data, that's partly why they have such ridiculous amounts of cache.
Don't forget to update your chip-set drivers, btw,
ID: 102846 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sid Celery

Send message
Joined: 11 Feb 08
Posts: 2114
Credit: 41,101,402
RAC: 21,872
Message 102890 - Posted: 4 Oct 2021, 15:42:57 UTC - in response to Message 102845.  

The 5800X has always run pretty hot from launch and BIOS updates have improved this with each version - the one I just updated to has made a significant difference and even though I'm not home I can see that PC is running tasks to completion rather than crashing almost all of them, so I think I'm on the right lines now, which is lucky as I'm going to be away from home for 8 days out of 10, with a few of them out of the country, so it'll be a while before I do anything with it for the remainder of the month.
Thanks for offering the tips

Check your CPU core temps as well. Also don't OC your system to much. RAH is sensitive to how fast your cram data. Python, not sure, but 4.2 yeah, touchy.

Finally back from London & Turin (& London again) and everything survived pretty well - few errors, no crashes at all, temps consistently 7-8deg lower and well below peak
Me, being me, I'll start tweaking up again over the next few weeks to see how far I can get while remaining 24/7 stable
ID: 102890 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1991
Credit: 9,520,400
RAC: 12,860
Message 102894 - Posted: 7 Oct 2021, 7:26:44 UTC

Another batch of Phyton wus.
And no possibility to choose....
ID: 102894 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile 4J2TqEp9pPkmvLkFuy8PL3QqQrvy

Send message
Joined: 16 Aug 10
Posts: 6
Credit: 13,240,689
RAC: 5,832
Message 102901 - Posted: 7 Oct 2021, 13:56:05 UTC

Hello the virtualbox tasks make my system unstable and regularly have it freeze for upwards to 2 minutes. I have tried to disable this task but there is no option to. Unfortunately this forces me to continually abort all of them as soon as they arrive. I really don't want to babysit tasks on my machine, appreciate if we could get this resolved asap.
ID: 102901 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile dcdc

Send message
Joined: 3 Nov 05
Posts: 1831
Credit: 119,473,844
RAC: 11,503
Message 102903 - Posted: 7 Oct 2021, 15:47:11 UTC - in response to Message 102901.  

Hello the virtualbox tasks make my system unstable and regularly have it freeze for upwards to 2 minutes. I have tried to disable this task but there is no option to. Unfortunately this forces me to continually abort all of them as soon as they arrive. I really don't want to babysit tasks on my machine, appreciate if we could get this resolved asap.


Can you give us more info - machine specs, OS etc? I'm not seeing any issues on my four that have virtualbox but they're all Win10, and only allow 50% RAM when in use, 90% when not.
ID: 102903 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Greg_BE
Avatar

Send message
Joined: 30 May 06
Posts: 5691
Credit: 5,859,226
RAC: 0
Message 102904 - Posted: 7 Oct 2021, 21:24:09 UTC - in response to Message 102903.  

Hello the virtualbox tasks make my system unstable and regularly have it freeze for upwards to 2 minutes. I have tried to disable this task but there is no option to. Unfortunately this forces me to continually abort all of them as soon as they arrive. I really don't want to babysit tasks on my machine, appreciate if we could get this resolved asap.


Can you give us more info - machine specs, OS etc? I'm not seeing any issues on my four that have virtualbox but they're all Win10, and only allow 50% RAM when in use, 90% when not.



Look at his computer #10 Vbox is spitting out some sort of message about the client not being ready
For example this one: https://boinc.bakerlab.org/rosetta/result.php?resultid=1433734958
<core_client_version>7.16.11</core_client_version>
<![CDATA[
<message>
Incorrect function.
(0x1) - exit code 1 (0x1)</message>
<stderr_txt>
2021-10-07 06:28:56 (6560): Detected: vboxwrapper 26202
2021-10-07 06:28:56 (6560): Detected: BOINC client v7.16.11
2021-10-07 06:29:04 (6560): Error in guest additions for VM: -2147024891
Command:
VBoxManage -q list systemproperties
Output:
VBoxManage.exe: error: Failed to create the VirtualBox object!
VBoxManage.exe: error: The object is not ready
VBoxManage.exe: error: Details: code E_ACCESSDENIED (0x80070005), component VirtualBoxClientWrap, interface IVirtualBoxClient

2021-10-07 06:29:04 (6560): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2021-10-07 06:29:11 (6560): Error in host info for VM: -2147024891
Command:
VBoxManage -q list hostinfo
Output:
VBoxManage.exe: error: Failed to create the VirtualBox object!
VBoxManage.exe: error: The object is not ready


***VBoxManage.exe: error: Details: code E_ACCESSDENIED (0x80070005), component VirtualBoxClientWrap, interface IVirtualBoxClient|***

2021-10-07 06:29:11 (6560): WARNING: Communication with VM Hypervisor failed.
2021-10-07 06:29:11 (6560): ERROR: VBoxManage list hostinfo failed
06:29:11 (6560): called boinc_finish(1)

</stderr_txt>

Read this post: https://forums.virtualbox.org/viewtopic.php?f=6&t=88405 it appears you did not set it up correctly.
ID: 102904 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile 4J2TqEp9pPkmvLkFuy8PL3QqQrvy

Send message
Joined: 16 Aug 10
Posts: 6
Credit: 13,240,689
RAC: 5,832
Message 102906 - Posted: 8 Oct 2021, 16:47:21 UTC - in response to Message 102903.  

Some Specs:

OS: Arch Linux
CPU: 12-Core AMD Ryzen 9 5900X, speed/min/max: 4100/2200/4100 MHz
Linux Kernel: 5.14.9-arch2-1 x86_64
Mem: 64214.4 MiB

Graphics: Device-1: AMD Ellesmere [Radeon RX 470/480/570/570X/580/580X/590]
driver: amdgpu v: kernel
Display: x11 server: X.Org 1.20.13 driver: loaded: amdgpu
OpenGL: renderer: AMD Radeon RX 480 Graphics (POLARIS10 DRM 3.42.0
5.14.9-arch2-1 LLVM 12.0.1)
v: 4.6 Mesa 21.2.3


Some details about my grievances:
The freezing happens primarily around starting, stopping task (suspending) tasks. I suspect this triggers some pretty heavy I/O. Which might be fine when there is 4 tasks but gets out of hand quickly when its 24. The tasks also incorrectly stop with 'waiting for memory', probably due to over provisioning of the virtual machines their memory. This is really annoying as I now can't reach 100% CPU utilization with these tasks even though BOINC is allowed to use 65% of 64GBs. I haven't seen memory utilization gone over 28GB which is not even close to the 65% of 64.
ID: 102906 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile 4J2TqEp9pPkmvLkFuy8PL3QqQrvy

Send message
Joined: 16 Aug 10
Posts: 6
Credit: 13,240,689
RAC: 5,832
Message 102907 - Posted: 8 Oct 2021, 17:09:37 UTC - in response to Message 102904.  

Read this post: https://forums.virtualbox.org/viewtopic.php?f=6&t=88405 it appears you did not set it up correctly.


I don't want these tasks, I don't have virtualbox installed for Rosetta@home and I have no intention of running virtualbox tasks for Rosetta. In addition, I am not using windows and virtualbox is accessible using regular user accounts without sudo (administrator) privileges.

Almost if not all of the vbox tasks I don't abort are completing fine. These tasks (early 7 October) just failed as I updated the kernel (which unloads vbox kernel module) and did not reboot immediately (making the tasks fail in communicating with the hypervisor). Here is a vbox task that completed without issue on this machine as example: https://boinc.bakerlab.org/rosetta/result.php?resultid=1434171117
ID: 102907 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Previous · 1 · 2 · 3 · 4 · 5 · 6 · Next

Message boards : Number crunching : rosetta python projects (vbox64)



©2024 University of Washington
https://www.bakerlab.org